Phyllostachys heterocycla genome wide

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These transcription factors have a variety of important functions in different biological processes in plants. Main Bamboo is one of the most important non-timber forest products in the world. Kanehisa, M. Figure 3: Gene expression at flowering time. The consensus sequences for the families were manually examined by aligning them to the known Repbase transposable element library version


  • There are a large number of transposable elements in moso bamboo ( Phyllostachys heterocycla var. pubescens) genome, but the. Genome-wide analysis and transcriptomic profiling of the auxin and signaling family genes in moso bamboo (Phyllostachys heterocycla).

    Here, we report a high-quality draft genome sequence of moso bamboo (P.

    heterocycla var. pubescens). The Gb assembly covers 95% of.
    Screened paired-end reads were then clustered into thousands of groups by Phusion2 with K -mer of 51 bp. Candidate gene association mapping of Arabidopsis flowering time. We then used the R package DEGseq 49 to digitally measure the differential expression at annotated loci.

    Each bracket indicates a duplication event of the CesA or Csl genes. Large multi-gene phylogenetic trees of the grasses Poaceae : progress towards complete tribal and generic level sampling. Costa, M.

    Scaffolds less than bp in length were not included in statistics and the following annotation.

    images phyllostachys heterocycla genome wide
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    Recent genomic studies in bamboo have included genome-wide full-length cDNA sequencing 2chloroplast genome sequencing 3identification of syntenic genes between bamboo and other grasses 4 and phylogenetic analysis of Bambusoideae subspecies 5.

    images phyllostachys heterocycla genome wide

    To obtain the best experience, we recommend you use a more up to date browser or turn off compatibility mode in Internet Explorer. The cellulose synthase superfamily in fully sequenced plants and algae. Non-monophyly of the woody bamboos Bambuseae; Poaceae : a multi-gene region phylogenetic analysis of Bambusoideae s.

    Phytochemistry 66— Some FMI-related genes and their upstream regulatory drought-responsive genes had been observed to have high expression during flowering Supplementary Fig.

    Request PDF on ResearchGate | Genome-wide identification and characterization of the Dof gene family in moso bamboo (Phyllostachys heterocycla var. The Dof (DNA binding with One Finger) family of single zinc finger proteins is a 26 Dof family genes in moso bamboo (Phyllostachys heterocycla var.

    pubescens).

    Video: Phyllostachys heterocycla genome wide How Fast Does Bamboo Grow? With Measurements

    first step towards a genome-wide analysis of the Dof genes in moso bamboo. Here, a complete genome-wide identification and characterization of the MADS- box non-timber forest species moso bamboo (Phyllostachys heterocycla).
    For other grass species, such as rice and sorghum, there was no obvious evidence of whole-genome duplication occurring later than the divergence time of grasses at 50 million years ago 161718 The estimated time of the duplication at 11 to 15 million years ago in maize is consistent with the reported divergence time of two progenitor genomes at about The moso bamboo transposable element library was composed of a total of 1, generated consensus sequences and their classification information, and the library was used to run RepeatMasker on the whole-genome assemblies.

    OrthoMCL clustered a total of single-copy gene families, which were subjected to phylogenetic analyses by Mrbayes Washio K Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone.

    Video: Phyllostachys heterocycla genome wide giant bamboo from seedlings

    images phyllostachys heterocycla genome wide
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    Suzuki, S.

    Genomics 534—40 A recent proteomics study showed that many metabolic processes of cell wall structure were employed in the fast growth of bamboo culms Methods 5— Genome Res. Both HCT and CCR family genes are key enzymes in catalyzing the conversion of phenylpropanoid pathway products into the material for lignin biosynthesis 27

    images phyllostachys heterocycla genome wide

    5 Replies to “Phyllostachys heterocycla genome wide”

    1. Rewriting the lignin roadmap. The moso bamboo transposable element library was composed of a total of 1, generated consensus sequences and their classification information, and the library was used to run RepeatMasker on the whole-genome assemblies.

    2. Libraries were constructed with Illumina sequencing technology and an amplification-free method Genomics 534—40

    3. The estimated time of the duplication at 11 to 15 million years ago in maize is consistent with the reported divergence time of two progenitor genomes at about

    4. Advertisement Hide. The timing of gene duplication events in grass genomes was estimated by calculating the synonymous substitution rate K S and the divergence time between homologous genes within the two-member gene families in which only a single divergence might have occurred.